Introduction
This document review and summarize sequence capture and genomic analysis of Symphonia globulifera.
0.1 Modus operandi (to discuss):
We will proceed sequence capture and genomic analysis of Symphonia globulifera with following steps:
- [x] Choose kit
- [x] Select sequence to be captured
- [x] Extract DNA
- [ ] Prepare libraries
- [ ] Raw data analysis
- [ ] Genome by Sequencing (GbS)
- [ ] Reads mapping
- [ ] SNP call
- [ ] SNP filtering
- [ ] Genetic data analysis
- [ ] Genetic structure of populations
- [ ] Genomic structure of polymorphisms
- [ ] Ecological genomic (genotype-environment association)
- [ ] Assocaition genomic (genotype-phenotype association)
0.3 Lexicon
- nuclear gene
- isoform
- scaffold
- transcript
- gene sensu Trinity